rs225282566 SNP Detail

Summary

• ID
  rs225282566
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:63780150 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTATCTC TTGCAGGGTG
  CTCTCCAGGG CTGTTAAATT TGCCGATGAA ACTGGCTTGC CCTAAAGTTC ATACTAGGGG
  AAGAAATTAG TGAGGGGGTC AGGAAGGGGA GGCTCAGTGC TGTGGAACGA GTGTGTGAAG
  TGTCTGTGGG TTGTATGGGG GTGCAAATAG TGTTCCAGGT GTTTGTGATG AGTTTGTGGA
  Y
  AGAGGTTACT AGAATTGAAC ATTCTGGCTC AGGTACAGTC TTGGGAACTT GGCTTAGAGG
  CTGACTTCAC ACTCGTCACC AGCCTCAGAG GCAAGTAGTA TTTCTTCTTC ACAGCATAGA
  GAACTGAGAC CCAGCATAAA AGCATTCTTA ATCAAATCTA CCAGTGTTAA TCTAATGGTA
  AAACTTGGTG GTATATGCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss361746678	MGP_WTSI_4_63522947	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225282566					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361746678	MGP_WTSI_4_63522947	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:63780150 () rs orientation: forward

Symbol	Name	Function Class
Rr593618	regulatory region 593618	1745 bp distal
Rr593619	regulatory region 593619	1292 bp distal
Rr593620	regulatory region 593620	317 bp distal
Rr593621	regulatory region 593621	258 bp proximal
Tnfsf8	tumor necrosis factor (ligand) superfamily, member 8	566 bp upstream
Tssr42075	transcription start site region 42075	992 bp upstream
Tssr42076	transcription start site region 42076	967 bp upstream
Tssr42077	transcription start site region 42077	867 bp upstream
Tssr42078	transcription start site region 42078	791 bp upstream
Tssr42079	transcription start site region 42079	620 bp upstream
Tssr42080	transcription start site region 42080	595 bp upstream
Tssr42081	transcription start site region 42081	558 bp upstream