rs225265807 SNP Detail

Summary

• ID
  rs225265807
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121487149 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCCCCGACT TGCTGTGAGT TGACAAATCC TCTTAAAGAC
  TCAACAGATA TTGACAAACA TTGATAAAAG CAATGGGTGA ACCCCCCTTA CCTCCCTGCC
  Y
  CCTAAGAAAC TCTAGGCTCC TAAAACAGTT ATTGCTTATT CATACTTTGT TCCCAGGTAA
  AGCTGTATTG ACCTGGAATG GCCTGTTGTC ATGGAACAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320484434	CHEV_2_121482404	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225265807					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121487149 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Frmd5	FERM domain containing 5			Intron
				Noncoding-Transcript-Variant
Rr563864	regulatory region 563864			1237 bp distal
Rr563865	regulatory region 563865			440 bp distal
Rr563866	regulatory region 563866			1516 bp proximal