rs225244863 SNP Detail

Summary

• ID
  rs225244863
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:90019385 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAAATGGA TCTCCACAGG
  CAGTAGGACA AAGGCATTTT CTGACCACTA AATAAAAATA GGGGAACTGA TAAAATCACT
  GAATGTGGAG AACAGGGTTC TCGGCAGCCA GTGTTCTGTA AGAGTCAAGT CTGACAGTGC
  AGTAGCCATC TCTTCCCCAG GCCTGGCATT CAGTAGCCCC TGTTTGTTCC ACCTGGTGCT
  K
  TCTAAATGCT GTTCAGTCCA GGTGCCTGCA CACATGGCAT CTGGCAGCAA GTGTTAGGAG
  AAGTGTGACA GGGAGAGAGA GGCCTAGAGC TGAGCGTCTC CAGAGCCACC CTGTAGGAAG
  TGGGTCTACT TGGATCTGAA CATAGGTTTG ATTTTCACTG TTGTGTGTTT TGACTTGAGC
  TTTTTACTGT GCTTGGTTAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397289562	MGP_WTSI_16_90222742	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225244863					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397289562	MGP_WTSI_16_90222742	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:90019385 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8420	CpG island 8420	894 bp distal
Rr519072	regulatory region 519072	1733 bp distal
Rr519073	regulatory region 519073	437 bp distal
Rr519074	regulatory region 519074	1703 bp distal
Sod1	superoxide dismutase 1, soluble	Intron
Tssr139277	transcription start site region 139277	1960 bp downstream
Tssr139278	transcription start site region 139278	1908 bp downstream
Tssr139279	transcription start site region 139279	1887 bp downstream
Tssr139280	transcription start site region 139280	1865 bp downstream
Tssr139281	transcription start site region 139281	1856 bp downstream
Tssr139282	transcription start site region 139282	1772 bp downstream
Tssr139283	transcription start site region 139283	1726 bp downstream