rs225197381 SNP Detail

Summary

• ID
  rs225197381
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:76238398 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTCAGTCA AGTGGTCTGA
  AGTATATACA CATGTTGGCT TGGTGACACA ATGTTAACCT TACTAGGTGT CTGCAGTTCT
  GCACAGAGCA ATTAATTCTG AAATCCGCAG AACGGCCTCA GAGGAGCCCA GGACCAGAAC
  AACAGCTGTG ATGTGTTCCT TGCTTCAGAC AGCTGGTTGT AGCCAATGCA AGCACTTTAA
  K
  ATTAAGGGAG GAATGAGGAG ATCCAGCGTT CCTAGATCAG CACACATCAG TCAATTCAAA
  GAAAAAGAGA AACAGACTGC CTGAATAGCT TTCTCATCCT GCCTCACCGA AAAGCCAACA
  GACTCTACCT TCAGTTTGTA TTGACCAAAA GGACCTTAGC CATACACCTG GAATAAAGAG
  CAACCTACAT CTTTTCTTTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321170487	CHEV_4_75966065	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225197381					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:76238398 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ptprd	protein tyrosine phosphatase receptor type D			Intron
				Noncoding-Transcript-Variant
Rr594082	regulatory region 594082			1956 bp distal
Rr594084	regulatory region 594084			within coordinates