rs225140923 SNP Detail

Summary

• ID
  rs225140923
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155966516 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAGTACAA TGCCTACAAC
  TATGTCATCA GTAAGATGAA ACAATTCTTT TTTCTTTTTT TTTTTTGTTT TGGTTTTTTT
  TTTTTTTTTT TTTTTTTGTT TTTTTGAGAC AGGGTTTCTC CATGTAGCCC TGGCTGTCCT
  GGAACTCACT TTGTAGACCA GGCTGGCCTC GAACTCAGAA ATCCGCCTGC CTCTGCCTCC
  Y
  GAGTGCTGGG ATTAAAGGCG TGCGCCACCA CACCCGGCTT AAGATGAAAC AATTCTTTGT
  GTGTCCATTA CAAGTATATC ACACAATCCT ACAGGACAAG CACTTGTAGA ACAATCTAAT
  CACACCTTAA ATGCTTATAA AACAAAAAAG AACAATAAAG TCCTTCAGGG TGGACTAAAT
  AGTGCTCCGG TAACCTTAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321443582	CHEV_4_155256168	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225140923					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155966516 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ints11	integrator complex subunit 11			Intron
				Noncoding-Transcript-Variant
Rr606604	regulatory region 606604			609 bp distal
Rr606605	regulatory region 606605			1594 bp proximal