rs225122470 SNP Detail

Summary

• ID
  rs225122470
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:109764696 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGGATCTA GGATACTGCT
  TGTTGGACTA AAGGACTCAC TAATCACCTT TCCCAACCCT GCCCAGGTAT ACCACCTCTA
  GTAAACAGAC TTAACTAGTC TTTGAAGGCA GTAGTTCTTT TCAATGAATT CCTATTTATT
  TATTTTCTTA TTTATCACCG TCTGTAAACA GGCTTTGAAG GCAGCATGTG TTATAAGATG
  Y
  GTTTATTCAA GCCTACCAGG GGTCCTTAAC CTGGGGGTTG ACTCAAGTAG AACATTTTAG
  GATCCAGGGT TATTCATGAA ACTGGGTGAG CTGTTTCAAC TTTTAGGCAG ACGTGCAGTG
  TTTTTGGAAG GAAGTCCAGT AGTTTTTCTG ATTACCAAAG AGTTCTTAAG TTTAGTTTGT
  GGGTCCAGGG CTCGGAACAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322394798	CHEV_7_117309003	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225122470					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:109764696 () rs orientation: forward

Symbol	Name	Function Class
Gm72506	predicted gene, 72506	within coordinates
Gm72511	predicted gene, 72511	554 bp upstream
Rr1426	regulatory region 1426	within coordinates
Rr407345	regulatory region 407345	1079 bp distal
Rr653201	regulatory region 653201	565 bp distal
Rr653202	regulatory region 653202	1169 bp distal
Rr653203	regulatory region 653203	550 bp distal
Rr653204	regulatory region 653204	494 bp distal
Rr653205	regulatory region 653205	495 bp distal
Rr653206	regulatory region 653206	within coordinates
Rr653207	regulatory region 653207	561 bp proximal
Rr653208	regulatory region 653208	994 bp proximal
Tssr2367	transcription start site region 2367	563 bp upstream
Tssr2368	transcription start site region 2368	737 bp downstream
Tssr68492	transcription start site region 68492	1168 bp downstream
Tssr74253	transcription start site region 74253	614 bp upstream
Tssr74254	transcription start site region 74254	863 bp downstream