rs225120326 SNP Detail

Summary

• ID
  rs225120326
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:53101626 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATGAGACA AAGGCTGTAT
  GCACTGTGTC CACTTCCCTA CCTCTGTGTG CATACCCTCC TGTTAGAAAT CCCCGCACCA
  CGCCCTCAAG TCACTGTCTG TGTCCATTCG TCTAGGCTTG TACTCATATA GCTACTTAAA
  TATTGCTCTG GATGTTTCGG TAAAGGTAGG TTCCCACAAA ATTAACACTT TGAATTGATC
  G
  GCGTATAACT GACTGACTAA CCGACCAGAT TATTTTCCAC TGCGTAATTC TGTTTTGCAT
  AGGATTCTGT TTAAAAATAG ATCAAATATA CTATGATTCC AGAAATCTTA ATTTAATATT
  ATTAAAATTA ATATATTTTA TAAATATACT CTCCCGCCTA GAGTTAAGAG CAGAATTATT
  GTAATTTTTG TAATCATCAT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320766875	CHEV_3_52998127	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225120326					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53101626 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lhfpl6	LHFPL tetraspan subfamily member 6			Intron
				Noncoding-Transcript-Variant
Rr576654	regulatory region 576654			1410 bp proximal