rs225115959 SNP Detail

Summary

• ID
  rs225115959
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126390322 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGAGAAG GGCGAAGACG
  TGACAGTAAA AACTGAAGCG AAACGTGGTG CCCTGACCAT CTTTGCCCCT AGCTAAGGGA
  CAGCCGGGCG CAGCAGAGGT GGCCAAGGCT GGCAGCCCCA GGCAGTAGCT GCGAGCCGGG
  GGACGTTGGA CCCGGGTCTG GGAGCAGTAA ACGCGAACCG CGCCCAGATG CAAGGGTTGC
  W
  TCCCTCTCTC GGCTTCCCCG GCCTCGCGGC CATCCCGCCC GGGTAGAGGC ATCCGGGTTG
  TGGGAGCTTC GAGTGGTCTC TCATCTTTCC GCCCTTCGTG GGTCACTGCG ACATCTCAGT
  CCCGTCCCCT TAAGCGCGCT CCCTGCTGCT CCGCGCATCT CCCTTCGGTC TCCCTAGACG
  GCTGCGGGAG AGCAGCCCGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320946577	CHEV_3_126299591	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225115959					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126390322 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Cpgi13785	CpG island 13785			within coordinates
Gm17225	predicted gene 17225			within coordinates
Rr367547	regulatory region 367547			209 bp downstream
Rr584646	regulatory region 584646			within coordinates
Rr584647	regulatory region 584647			213 bp proximal
Rr584648	regulatory region 584648			325 bp proximal
Rr584649	regulatory region 584649			752 bp proximal
Tssr31566	transcription start site region 31566			330 bp downstream
Tssr31567	transcription start site region 31567			301 bp downstream
Tssr31568	transcription start site region 31568			254 bp downstream
Tssr31569	transcription start site region 31569			140 bp upstream
Tssr31570	transcription start site region 31570			288 bp upstream
Tssr31571	transcription start site region 31571			320 bp upstream
Tssr31572	transcription start site region 31572			429 bp upstream
Tssr31573	transcription start site region 31573			565 bp upstream
Tssr31574	transcription start site region 31574			626 bp upstream
Tssr31575	transcription start site region 31575			742 bp upstream