rs225115301 SNP Detail

Summary

• ID
  rs225115301
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:68732377 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTATCAGAG AGTGCTCTGG GCCAGAGCAG
  GGGAGGAATT TGCCCTTGGC TCTTTGGGGG AGTTAATTTT CAGCTCTCCC TGACCCTCCA
  ATACTATTCA CTGGACTGAA AACGGGGCTA GAGTAGAAGC TGTAGACCTC ATCAGCTGCT
  W
  TTTTTTTTTT TTAAATCATG CTCTTCTATG GGCGTTAGCC ATTGAAGCCG TGGAATGTGT
  GCTCGTTTAT GGTTGGTTCC TGGAATTTCA GGGAGTCAAT TACTTTGTTT ACTTTACTCC
  TTTACCTCAG GACCTTGAAG TCACATGTTC                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322688846	CHEV_8_70803624	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225115301					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:68732377 () rs orientation: forward

Symbol	Name	Function Class
Rr664394	regulatory region 664394	2000 bp distal
Rr664396	regulatory region 664396	954 bp distal
Rr664397	regulatory region 664397	within coordinates
Rr664398	regulatory region 664398	1591 bp proximal
Sh2d4a	SH2 domain containing 4A	Intron