rs225083195 SNP Detail

Summary

• ID
  rs225083195
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137006329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTCGTTGG GGTCAGAGCC
  ACCCAGAGCT TGGGAGACTG AGGTGATGTG GAATTCTCCC AGCTGTTCCG AGAGCTCGCA
  ATTCCTCTGA GGCCCAAAGT GGCTGCATTG TTTTTCCTGG ATTCTTAATT TGATTAACAC
  TTCAGGGGCA GTGGCAGAGT GGACAGAAAC CAGGGCACAG CCACCGTCCC CTCCCCTCCC
  G
  CCCCCCACTT CTTGCAGAAT GCTCCCTCCC CCAGTGAGAC CTGGGTTGCA GACCTGAGAA
  AGCACTTTGC ACTTGAAGGA GTCTGGGGTC TCTGGAGTTG CCTCTTAAAT AGATAGGTTT
  AGAGGTCTGA GCATCAGGGG AAACTAGAAG TTCAGCTGAC CTGCCCAGCA CCAAGCAGTA
  CAAAAAAAAA AAAAAAAAAA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	RF/J	RIIIS/J	ST/bJ	SWR/J	WSB/EiJ
ss363411984	MGP_WTSI_4_136834933	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	RF/J	RIIIS/J	ST/bJ	SWR/J	WSB/EiJ
rs225083195					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363411984	MGP_WTSI_4_136834933	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137006329 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15125	CpG island 15125	171 bp distal
Rr602576	regulatory region 602576	1519 bp distal
Rr602577	regulatory region 602577	8 bp distal
Rr602578	regulatory region 602578	371 bp proximal
Tssr1345	transcription start site region 1345	1533 bp downstream
Tssr39739	transcription start site region 39739	1500 bp downstream
Tssr39740	transcription start site region 39740	1429 bp downstream
Tssr44110	transcription start site region 44110	177 bp downstream
Wnt4	wingless-type MMTV integration site family, member 4	Intron