rs225080647 SNP Detail

Summary

• ID
  rs225080647
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119459242 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTGAAGAG GAGTATTATA
  TATGCAAATT ATGCCCCACC CCAACCCTCT TGCAAGTCTT CCCACCGAGA GGTTAGCTAG
  TGAGGCTGTT AGCTAGTGAG GCTTCCCGTC CTGTCGGGGA GTGAGCCGTG TCAGCAGAGA
  GCCTGAGGCT ATGTGAATGA AGGGAGGAGG CTGAACTTCA TGTCCTGTCT GAGTTCTGTT
  M
  TCGAAACGGG AGCTTGTGGG TTTGAAAACT TTTGTTTCTA AATGGAGGAA TAGATGACTT
  TATTTTGGTG GGGGGTTGGG ACTGTGGCTT TAAAACAAAT CGCTTTTGAG TAGGATGTAT
  ATTTTTGTTG GATATTTTGT TTGTTTATTT TTTTAGAGTC CTCCACAGCA ACATGAGAGA
  CCATGGAGAA ACCCAGAGAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321928135	CHEV_6_119432299	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225080647					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119459242 () rs orientation: forward

Symbol	Name	Function Class
Fbxl14	F-box and leucine-rich repeat protein 14	mRNA-UTR
Rr637692	regulatory region 637692	1867 bp distal
Rr637693	regulatory region 637693	within coordinates
Rr637694	regulatory region 637694	598 bp proximal
Rr637695	regulatory region 637695	885 bp proximal
Tssr58506	transcription start site region 58506	887 bp downstream
Tssr58507	transcription start site region 58507	793 bp downstream
Tssr58508	transcription start site region 58508	740 bp downstream
Tssr58509	transcription start site region 58509	718 bp downstream
Tssr58510	transcription start site region 58510	330 bp downstream
Tssr62722	transcription start site region 62722	1787 bp upstream
Tssr62723	transcription start site region 62723	701 bp upstream
Wnt5b	wingless-type MMTV integration site family, member 5B	Intron