rs225077404 SNP Detail

Summary

• ID
  rs225077404
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:152665936 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    atgtcctgg aactcacttt gtagaccagg
  ctggcctcga actcagaaat ccacctgcct ctgcctccgg agtgctggga ttaaaggcgt
  gcgccatcac tcccggcttt acatggcttc tgaggacttg aactcatgtc ctcttccttg
  W
  gtggaaaaca ctttaaacac taagtgatct tgctagctcA GTGCTTATTG TTTTGTTCTG
  TTTTTTTTTT CCTCCAattg tatgtgcatg aacgtttcgt tttgcccgtc attgtgtagc
  tatacatatt ccgtacatgc agtgtccaag                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320068148	CHEV_1_154637315	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225077404					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152665936 () rs orientation: forward

Symbol	Name	Function Class
Rr420541	regulatory region 420541	48 bp proximal
Rr420542	regulatory region 420542	151 bp proximal
Rr420543	regulatory region 420543	275 bp proximal
Tssr9422	transcription start site region 9422	1710 bp upstream