rs225043685 SNP Detail

Summary

• ID
  rs225043685
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:96982558 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAATGCCC AGCTACAAGG
  CAATCCAATG CCCCACCCAT CCAAAGTTGT GCTCCAGGAC CTGTGCCCTA GCACTTTCAA
  TGCCCAGCTA CAAGGCAACC CTTCTATGGT GTCTTCAGGC TGGAGCTATT TGAAAGCCCT
  TTGTTTACAG TTATCACTGT TGGGAGGAGT GGGAAGGCCA CAGGAAGAGA AAGCTGAAAG
  R
  AGGTGTGGGT GCCTGAGGAA AACCACAAGA TGAGCCAGGG TGGCTAGGGA AAGTTCTGCC
  TGCGGTTGAG GGATGGTGTT GGGACCATCT TCAACAAAGC ATTTCTGTGC AAGCAAGGAA
  ATGCCTCAGG TTGGGTGGTC TCTTCTTCCA GCCCACCCCC ACCCCGCCCT GATGGGCACA
  AATCCCAGTG CCCCTTGTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372444501	MGP_WTSI_7_104481861	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225043685					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372444501	MGP_WTSI_7_104481861	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:96982558 () rs orientation: forward

Symbol	Name	Function Class
Kctd21	potassium channel tetramerisation domain containing 21	Intron
Rr400445	regulatory region 400445	959 bp downstream
Rr651402	regulatory region 651402	1342 bp distal
Rr651403	regulatory region 651403	1014 bp distal
Rr651404	regulatory region 651404	1018 bp distal
Rr651405	regulatory region 651405	within coordinates
Tssr67964	transcription start site region 67964	1020 bp downstream
Tssr67965	transcription start site region 67965	700 bp downstream
Tssr73573	transcription start site region 73573	1256 bp upstream
Tssr73574	transcription start site region 73574	1237 bp upstream
Tssr73575	transcription start site region 73575	1209 bp upstream
Usp35	ubiquitin specific peptidase 35	1331 bp upstream