rs225037563 SNP Detail

Summary

• ID
  rs225037563
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:67513556 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATTTACAA AAACAAAATG
  TTGCAGCATC TGAAGACAGG CTAGTTAAAA CAATTCTATT GCTACATCAC CTGCACAGCA
  CAATCCAGTT GTCATGGTGT GCCACATATG AAAAGTCCTA TTGAACAATG CATATGCCTG
  TACTTGTGTA AGATAAATGA AAAGAAAAAA AATTGTAGAG TAAGCCAGTC CACTAGGAGA
  R
  ATGTACAATT TGATTCTAAG AGAGGCAATT TTTTATTTTC TTTCCCTGTA TTGAATGATA
  TAACGAGAGA AGGGAGCCTG TGAGAAACTG TGCTTCTTTA ATAGGATGAA GGAGCGACAC
  TCTCTTTTAG AATCTAGAGA AAGTCCACCG CTCAAAGCTG TGGTAAAATT AACAATAATT
  AACAAACTAT AATTATTTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321812340	CHEV_6_67486566	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225037563					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:67513556 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17512	CpG island 17512	696 bp distal
Gm42889	predicted gene 42889	within coordinates
Rr631668	regulatory region 631668	1760 bp distal
Rr631669	regulatory region 631669	1317 bp distal
Rr631670	regulatory region 631670	766 bp distal
Rr631671	regulatory region 631671	496 bp distal
Rr631672	regulatory region 631672	593 bp distal
Tacstd2	tumor-associated calcium signal transducer 2	776 bp upstream
Tssr1872	transcription start site region 1872	1791 bp upstream
Tssr61255	transcription start site region 61255	1827 bp upstream
Tssr61256	transcription start site region 61256	1346 bp upstream
Tssr61257	transcription start site region 61257	875 bp upstream
Tssr61258	transcription start site region 61258	770 bp upstream
Tssr61259	transcription start site region 61259	702 bp upstream