rs225028501 SNP Detail

Summary

• ID
  rs225028501
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117230729 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACTGCTCC CTTTGCCATT
  TTTTTTAAAG ATAAAAAATA TGACAGCACC ATAGTCTCTG AATGCCTCAG CCACATATTC
  ATGCCCATAC ACACAGCTCC AATGTTCACT TCCACGACCC ATGCGCTCGC TTTCACTCTC
  TCTCTCTCTC TCCAGTCCCC CTCCCTCTCT CCCTCATTCT CCCTGCTAGC TGCAGTAAGG
  M
  TCAGTCCCCA AAGAAAAATG CCCAATTTGT CATGTCATGT CCAGCTGTTA ACCTCCCGTC
  GGTAAGCCAT GGGGAAGACT TACTTTCTCC TATTTATTTA TTTGCCACTT GGACAATAGA
  AGGCCCCAGG CCTGCTGAGT TCTCCATAAT AAAGCCACCA ACGATCTCCC CCATCGCCCC
  CTCCCCTCCC CCCACCCCCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321279260	CHEV_4_117046137	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225028501					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117230729 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rnf220	ring finger protein 220			Intron
				Noncoding-Transcript-Variant
Rr377055	regulatory region 377055			within coordinates
Rr598133	regulatory region 598133			1337 bp distal
Rr598134	regulatory region 598134			within coordinates
Tssr42980	transcription start site region 42980			1921 bp downstream
Tssr42981	transcription start site region 42981			1939 bp downstream
Tssr42982	transcription start site region 42982			1963 bp downstream