rs225023958 SNP Detail

Summary

• ID
  rs225023958
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:154798025 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTCACTTC AGGGTCTCTC
  TATCTTGGCA ATGGGAGACC CAGAAGGCTG GACTTCTGCA GAATAAATAC TCTTTGTGTT
  TACATACTGT TGGAATCTGG GGCATCATTC TTTGGTGACT CATTCTTCAG TGAATCATGG
  ACTCTTCCAC TACTTGACAG ATTGGCTCTG AACTCATATT TATTTTCTAT CTATCTACCA
  M
  ACGACCGATC GATCTACCTA TTATCTATCT GTCTATCAAT TATCATCGTC TATTTGTCTG
  TGCAATCCAG GTAGGTCTTG AACCTCGTTC CTACTGCCTT AGCGTCTCAA GTAGATGACA
  GTACAGACTT GCGACACCAG TCCTAGCTTC TAATATTTTT ATTAACGATG ATCAAACTAC
  ACTTTATATA AGCAATCAGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss360335672	MGP_WTSI_3_154755352	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C	C	C	C	A	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225023958					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C	C	C	C	A	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360335672	MGP_WTSI_3_154755352	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:154798025 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13973	CpG island 13973			745 bp proximal
Fpgt	fucose-1-phosphate guanylyltransferase			Intron
				Noncoding-Transcript-Variant
Gm26456	predicted gene, 26456			260 bp downstream
Lrriq3	leucine-rich repeats and IQ motif containing 3			1046 bp upstream
Rr398138	regulatory region 398138			861 bp upstream
Rr587919	regulatory region 587919			289 bp proximal
Rr587920	regulatory region 587920			1005 bp proximal
Rr587921	regulatory region 587921			1211 bp proximal
Tssr32470	transcription start site region 32470			1026 bp upstream
Tssr32471	transcription start site region 32471			1114 bp upstream
Tssr32472	transcription start site region 32472			1171 bp upstream
Tssr32473	transcription start site region 32473			1199 bp upstream
Tssr36281	transcription start site region 36281			1235 bp upstream
Tssr36282	transcription start site region 36282			805 bp downstream
Tssr36283	transcription start site region 36283			958 bp downstream