rs225007579 SNP Detail

Summary

• ID
  rs225007579
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142235744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGTAGAAG GCATAGCAAG
  CTAACCCGTA GGGGACATGA AAAAGGGAGA AGCCAGACTT TCATATGTGC TGCTGCACAG
  CAAGATAAAT GATGGTGACT GTGGCATACA TCTCAAAAAA GAAGTGTTAA CAGTTTGAAG
  AGATAGCTAT GTTAACCCAG TCTGCATCAT ATATCACATG AGGTATCCAA TGCACAGAAA
  S
  AACCCATTAC CTTTTTAATA TGTACAGTAT TACTATCATG CACGAGTTGC GCGTTTTTTA
  AGGTAAAAAC GTCTCGTTGG TGTCAACCTC TTGGAATAAG CCAGTGGCAG GAGCTGGCAC
  ATTTCTGTTG CAGCATTCTG TATTTCCCAA TAGAAGTCAG TATTTAGAGA ATCAGCGACT
  TGTTTTCATC CGCCGCCCAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321002538	CHEV_3_142192947	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225007579					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142235744 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13887	CpG island 13887	508 bp proximal
Gbp7	guanylate binding protein 7	359 bp upstream
Gm66604	predicted gene, 66604	within coordinates
Rr586449	regulatory region 586449	within coordinates
Rr586450	regulatory region 586450	370 bp proximal
Rr586451	regulatory region 586451	887 bp proximal
Tssr32116	transcription start site region 32116	304 bp upstream
Tssr32117	transcription start site region 32117	346 bp upstream
Tssr32118	transcription start site region 32118	1891 bp upstream