rs224971298 SNP Detail

Summary

• ID
  rs224971298
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:134641931 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCTAAACAA GCTAAAGGGA AAAACTGATA
  GACTTTTGTG ATGAGTTCGG GTCTGAAAAT ACACTCGTTT TTATCTAATG ATTGGAAAGA
  AAAGCAACCC ACTATGTGTA ATTGTCGGTT CCCCCAATGG CCCACCCGAG TCCATTTTTC
  S
  TTGCACAATT CTTTGACATT TTCAAAGGCA GACCCGCCCT GCAGACTGGA GGAACAGGGC
  GCGGTTACGC GTGGGCCGAA CCCCGACGCG CCACCGTCGG ATGAGCGTGC CCAGCTCCAC
  AGTTCTGGGG AAGAGTCCCC GCCACAGGAA                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321349937	CHEV_4_134470535	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224971298					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134641931 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15052	CpG island 15052	within coordinates
Rr601858	regulatory region 601858	693 bp distal
Rr601859	regulatory region 601859	952 bp distal
Rr601860	regulatory region 601860	within coordinates
Rr601861	regulatory region 601861	385 bp proximal
Tmem50a	transmembrane protein 50A	Intron
Tssr39578	transcription start site region 39578	469 bp upstream
Tssr43943	transcription start site region 43943	320 bp downstream
Tssr43944	transcription start site region 43944	355 bp downstream
Tssr43945	transcription start site region 43945	390 bp downstream