rs224889115 SNP Detail

Summary

• ID
  rs224889115
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:139337547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGCAGGGA AGAGAGGTGC
  TAGGGTGAAT GCAGTCTAGG CTGGGCTTCT CTCCACAGAC AAGACCTGGC TGTAAGGACT
  GCGGATGGCT TCTGCGCCTT CCTCAGCTCA GCATTTGTGC AGGGCGTGGA TAACACCCCA
  GGGAATAGGC CCCGTGGTGA GGGGCCCTGC TTGGGGGGTA GGACTCCAGG TGCCTCATGT
  Y
  GAGGCAGGCT GCGGGGAAGC AACCCAGCTA CTTCTGGTGC CAAGAGCCAC CCGCCCGCAG
  AGCCCTTTCT CACAGAGGCA CCTCCTCCCC AGTGAGGCCT CCAGGGTTTA AGAGACAGGA
  TTAGAGCCCA GACAGCTAGG GCTGTAAACC CAGCCACCTG CTGGGTCTGT TCACGGTCTC
  CTAAATGGGA TGGCCCCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321704297	CHEV_5_139827746	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224889115					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:139337547 () rs orientation: forward

Symbol	Name	Function Class
Cyp2w1	cytochrome P450, family 2, subfamily w, polypeptide 1	825 bp upstream
Rr623253	regulatory region 623253	1666 bp distal
Rr623254	regulatory region 623254	385 bp distal
Rr623255	regulatory region 623255	within coordinates
Rr623256	regulatory region 623256	335 bp proximal
Rr623257	regulatory region 623257	1904 bp proximal
Tssr49499	transcription start site region 49499	815 bp upstream