rs224859207 SNP Detail

Summary

• ID
  rs224859207
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:62421906 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCTGCCAC CCTGGAGACT
  AGACACGAGT AACTTAGTAA AGCTAGAATC CAGGCTAGCT TTAAGTAGAT TTCCAAGATA
  ATCAATGTCA GCTGCCATTT GGTAGGTCTC TCCATGTGCT GTTGGCACAG TGACAGATGG
  TTGATATCAA GTCAGATCAC ACAGAAAACC TCTTTGAGCA TTTAAGAAGA TTCTTTTCAG
  R
  AGAGAAAACA GACTTCTAGG TGCTTAAGGG TTTTGTTTCA GGTCACATAC TACACAGCAC
  GCTGCCCATC TCCAAAGAGG GTTTGCCAGC GTGTATTGAT TGGCTCACCT GGGCCAATGA
  CCTTGACCTA ACTGTTGGGC CACTAGAATC TACTTTTTAT TGTCTCTAGG TTAGCAGCAG
  CAAGGAACAA TACACAGATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321142489	CHEV_4_62164703	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224859207					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:62421906 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14361	CpG island 14361	1159 bp distal
Hdhd3	haloacid dehalogenase-like hydrolase domain containing 3	1469 bp upstream
Rr593325	regulatory region 593325	1404 bp distal
Rr593326	regulatory region 593326	903 bp distal
Rr593327	regulatory region 593327	1791 bp proximal
Tssr42008	transcription start site region 42008	1487 bp upstream
Tssr42009	transcription start site region 42009	1443 bp upstream
Tssr42010	transcription start site region 42010	1409 bp upstream