rs224854851 SNP Detail

Summary

• ID
  rs224854851
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118998712 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGAATTCGG GTTAGAGGTG GAGAGGGCTG CGGGCAGCCT
  GGAGAGCACC ACGCGGGGGT CTGAGGTCAC GCTTCTCTAG GTGAAGTTTC GGGGGGGGAC
  R
  TGGGAGGGAG GTGGTACTGG CTGCTTTATA AGTCTCCTCA AATCCCCTTT CAAAGGATAC
  CTGGTGCCCC CCCACCCCCA CAGCTAAATA GCTGGGCGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320473946	CHEV_2_118993967	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224854851					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118998712 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12107	CpG island 12107	within coordinates
Gchfr	GTP cyclohydrolase I feedback regulator	Intron
Rr563426	regulatory region 563426	448 bp distal
Rr563427	regulatory region 563427	595 bp distal
Rr563428	regulatory region 563428	within coordinates
Tssr19604	transcription start site region 19604	452 bp downstream
Tssr19605	transcription start site region 19605	396 bp downstream