rs224844517 SNP Detail

Summary

• ID
  rs224844517
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:108477091 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCCGGGGCG CGCGAAGAGA
  ACCAGGTAAG AGGCCTCTCG GAGAAACTAC GGCAGGAATG GGGCACGCCT ACCGTGGGTG
  AAGGACGCAG CACGCCACAC CTCACGACGC TGCCGCCAGC CGGTATCGCG TTACCTGCTC
  CAAGATGCCT GCGCGCAGCC GGCCCCACCC TCGGCGTCAC CTGTGGGCGC GCCCCGCCCG
  Y
  TTCCCCGCGC ACATGCGCAC GGCGACCCGC CGGCTGTGGT GTCACGTGCC GGGCGCCTGC
  CACCGCCTCC TGGGCGGGAG CTTCCTGTGG CTGTCTCCGC CGCGGCCGCC CGGGGGCCGC
  GGAAAGCTAG GCGGTTCCGG GCTCGAGAAG GCCCGGTTTT GGTTCGGATC CGCCGCGAGG
  TATGCCACGT GCCCGCTTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362785697	MGP_WTSI_4_108292499	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224844517					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362785697	MGP_WTSI_4_108292499	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108477091 () rs orientation: forward

Symbol	Name	Function Class
Cc2d1b	coiled-coil and C2 domain containing 1B	46 bp upstream
Cpgi14562	CpG island 14562	within coordinates
Gm12743	predicted gene 12743	within coordinates
Rr597201	regulatory region 597201	1549 bp distal
Rr597202	regulatory region 597202	56 bp distal
Rr597203	regulatory region 597203	within coordinates
Rr597204	regulatory region 597204	57 bp proximal
Rr597205	regulatory region 597205	1848 bp proximal
Tssr38307	transcription start site region 38307	31 bp upstream
Tssr38308	transcription start site region 38308	115 bp upstream