rs224843848 SNP Detail

Summary

• ID
  rs224843848
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:76867249 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGTTCAAT TCCCAGCACC
  CACATGGCAG CTCACAATTG GTACAGGGAC CATTCTACCT CTGGTCCACC TACAAGGTGC
  AGGTCCTTCA GGAATCCTAA CACAGGGATA AACAGGACTG CAGGAAGCCC AGTGCCCTGG
  GATAGATGCG CTTATCAGTA TCTTCTTCTC TGTGACATAT AGGCCATGCA GACTGGATAC
  Y
  ACTACCTGTT CCTGTGGGTA GGGTGTCCTC ACTGAACCCC AAAGAGGCAC AGACCTGTCT
  GGCACAGAGA TAATCACAAT CTTCCTCCAC ACCCCCTCTA CCTCCTTTAC CTTGCCCTTC
  AGGCTGTAAG TAGTAAGTGG CCCGAGGGTG TAGATAACCA ACACAGCCAG ATATGGGAGC
  CTTCCAGCTC ACCCTAAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380958619	MGP_WTSI_10_76494160	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224843848					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380958619	MGP_WTSI_10_76494160	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:76867249 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1753	CpG island 1753	1051 bp proximal
Gm3137	predicted gene, 3137	1840 bp upstream
Rr434375	regulatory region 434375	1350 bp distal
Rr434376	regulatory region 434376	779 bp proximal
Rr434377	regulatory region 434377	1238 bp proximal
Rr434378	regulatory region 434378	1307 bp proximal
Rr434379	regulatory region 434379	1581 bp proximal
Rr434380	regulatory region 434380	1728 bp proximal
Rr434381	regulatory region 434381	1864 bp proximal
Slc19a1	solute carrier family 19 (folate transporter), member 1	854 bp upstream
Tssr94203	transcription start site region 94203	815 bp upstream
Tssr94204	transcription start site region 94204	843 bp upstream
Tssr94205	transcription start site region 94205	1296 bp upstream
Tssr94206	transcription start site region 94206	1825 bp upstream
Tssr94207	transcription start site region 94207	1845 bp upstream
Tssr94208	transcription start site region 94208	1875 bp upstream
Tssr94209	transcription start site region 94209	1889 bp upstream
Tssr98215	transcription start site region 98215	1861 bp upstream