rs224814248 SNP Detail

Summary

• ID
  rs224814248
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:32791652 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGGCTCTC GTGTGAAGAG
  CTGCTGCAGA TCGGATGGCC TTGTTTAAGC TCAGCGTTTG CGAAGCGCCT TGCCACGCCA
  TGCTGGGCGC TGCTCCCTCG CTGCCAGGCT AGGCAGGCAT GGAGCTGCTG CCCGCGTCTC
  CAAGGGCAAC TGCACACACT TCGTTGTTGA GACAGGGTCT CGGGGATCCG AGGCTGCACT
  T
  GTCCCGGCTC CCGAGGGCTG GGATTGCAGG CTTGCACTGC GTCGCTGGGC TCAGGGCAGA
  ATCAGGGTGC GTGGCACCTG CAGCTGGTTC CAACCCGCAG ATAGGAAGTT GCTGAGAAGC
  GCACTGAAGT GAAGGCTGTC ATGGTGTTCC TAGGCACGAG TGTAAAAAGG CTCCAGGTGA
  CAGGCCCGTT AGGCACGGTA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CBA/J	CE/J	CZECHII/EiJ	JF1/MsJ	LEWES/EiJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWK/PhJ	SEA/GnJ	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357472313	MGP_WTSI_3_32636425	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CBA/J	CE/J	CZECHII/EiJ	JF1/MsJ	LEWES/EiJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWK/PhJ	SEA/GnJ	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224814248					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357472313	MGP_WTSI_3_32636425	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32791652 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13062	CpG island 13062	within coordinates
Gm9859	predicted gene 9859	within coordinates
Mrpl47	mitochondrial ribosomal protein L47	748 bp upstream
Ndufb5	NADH:ubiquinone oxidoreductase subunit B5	Intron
Rr367422	regulatory region 367422	448 bp downstream
Rr575021	regulatory region 575021	422 bp distal
Rr575022	regulatory region 575022	within coordinates
Rr575023	regulatory region 575023	283 bp distal
Tssr28770	transcription start site region 28770	421 bp downstream
Tssr32937	transcription start site region 32937	726 bp upstream
Tssr32938	transcription start site region 32938	721 bp upstream