rs224804966 SNP Detail

Summary

• ID
  rs224804966
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141302694 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTCTACA TGCTAGTGAG
  GTCATACTCC AAGCACCTGG GTGTGGCCTC AGGCGAGAGG GACCCTGGCA CAGGGCCATG
  GGCAAGTTCA GCGCTCCCCA GCAACTCCTG ATGGTCCTTT GTTCAGAGTC CAAGTTCCCA
  GGTCTCATTC TTGAATTTCC GGGCATCCCC TCCAAACAGG TGACAGTTTG GGCCAGCGAC
  C
  GGCTTAATCT CCGGCCGCAG GTCTCCTTTC GAGAGGCCGC ATTCCTGAGA CAGGTGGAAA
  AGTTTCATGA CCACGTCACT CTTTTGGGAT GTTTTCTCTC TCCGAAATAT GAGCATTGAG
  AACCCTACGC GTTGAGAAGC TGGTGAGAAG CCAGAGAACC TTGGCTCCGG GTATCAACTC
  GCTGGCTCAT GCTGCCCCCT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321388159	CHEV_4_141131298	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224804966					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141302694 () rs orientation: forward

Symbol	Name	Function Class
Fblim1	filamin binding LIM protein 1	679 bp downstream
Gm68503	predicted gene, 68503	209 bp upstream
Rr377309	regulatory region 377309	1406 bp downstream
Rr603811	regulatory region 603811	1202 bp distal
Rr603812	regulatory region 603812	220 bp distal
Rr603813	regulatory region 603813	within coordinates
Rr603814	regulatory region 603814	189 bp proximal
Rr603815	regulatory region 603815	1676 bp proximal
Tssr40086	transcription start site region 40086	1857 bp downstream
Tssr44332	transcription start site region 44332	1422 bp downstream