rs224787381 SNP Detail

Summary

• ID
  rs224787381
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79289325 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AACTCAAAA CAAAAACAAA ACACCAACAC
  CAAAACCCCT AGCAATCAGA CAGGGTAAGA TGTTAATATA CATGGGAGTT CTACCCAATC
  CTTGTTTTGT CAAGACTTGA AAAACCAAAT GGAATTGTGG AGGAGCCACT TGGACAAAAA
  M
  CTGCCAGCAG TTTCTCAGGT CTGGACTTCA GTCTTCAGCC ATATCTCCTC TTGCCCCTGG
  GTGGACACTG AACAAATCAA CTATCCACAC TGATTGACTG TCCCATCAGA ATTGATCATA
  GAATCCTTCC ATAGCAGCCC AGGCCTCTTC                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320811401	CHEV_3_79185940	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224787381					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79289325 () rs orientation: forward

Symbol	Name	Function Class
Rr578510	regulatory region 578510	1509 bp distal
Rr578511	regulatory region 578511	349 bp distal
Spmip2	sperm microtubule inner protein 2	Intron