rs224759221 SNP Detail

Summary

• ID
  rs224759221
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132244106 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTATAGC CCTGGCTGTC
  CTGGAACTCA CTTTGTAGAC CAGGGTGGCC TCAAACTCAG AAATTCACCT GCCTCTGGCT
  CCCAAATTCT GGGATTAAAG GCGTGCACCA CCACTGCCCA GCTTGTATTT ATTGTCTTTG
  TAAGCTCTTA CATAATGCAG GGTCTTTTGT AGCACAGGTC TCCTTGGCCT TTTGTAGACC
  R
  GGGGTGGGGG TGGGGGGAGG GTGGGGTGGG GTGGGGGGAT ATATGAGACC TTGACTGACT
  GCTTGTCCTG TGCACAAGCT GGAGTGCTTA GATTATACCC CTGTGCTATC ATTCTGGGCT
  CTTCAACTTT TAATCCTTTA CAAAAAATCA GTAGTTTATT TCTTTTCCGT TTATGTGCCT
  GTGTGTGACC CGATGAGCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SWR/J	ZALENDE/EiJ
ss363295774	MGP_WTSI_4_132072710	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SWR/J	ZALENDE/EiJ
rs224759221					SNP	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363295774	MGP_WTSI_4_132072710	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132244106 () rs orientation: forward

Symbol	Name	Function Class
Gm68741	predicted gene, 68741	within coordinates
n-TAagc8	nuclear encoded tRNA alanine 8 (anticodon AGC)	716 bp downstream
Rr377207	regulatory region 377207	480 bp downstream
Rr600996	regulatory region 600996	1505 bp distal
Rr600997	regulatory region 600997	1844 bp distal
Rr600998	regulatory region 600998	767 bp distal
Rr600999	regulatory region 600999	979 bp proximal
Tssr39372	transcription start site region 39372	967 bp downstream
Tssr43681	transcription start site region 43681	1361 bp upstream