rs224719668 SNP Detail

Summary

• ID
  rs224719668
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37780579 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAATGAAGT TTAGCTCCAG
  ACACTGGTTG CCATAGCTGT TGGATCAGAT CAAGAAAACG TTGCTTCATT AGAATTTGAG
  AGCCAAAAAT CAATGGTTTT GGGAAGCAGA TTCACTTGCA GCTATGAATA ATAAAGACTG
  ATGATACAGA AATGTAAGTC CTCACATAAG ACTCCCAGGA AGGGCTACTC AGAGCAGGTG
  M
  TCAAGCTCCA GGCATGCTCA GGGACCCAGG CTGCTTCCAG GCTTTGGCTC TCGTGTCCCA
  AAGCATCAAG TTCATTCTCA TAGTTGCCTT GGGGTCCAAG GTGGCTGCCA GACTCCGTCC
  ACTGCACTTG CATTGCAGGC TCAGCAAAGT CAGAAGAAGG AACAGCAAGA GGGATGTGCA
  GCCCAGCTGG GCCAGTCTTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320712082	CHEV_3_37625352	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224719668					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37780579 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13102	CpG island 13102	1763 bp distal
Gm36620	predicted gene, 36620	within coordinates
Rr575550	regulatory region 575550	1450 bp distal
Rr575551	regulatory region 575551	194 bp proximal
Rr575552	regulatory region 575552	1700 bp proximal