rs224711348 SNP Detail

Summary

• ID
  rs224711348
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:145799979 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTAAAGTA GCAACTTCTT
  TTAATAGTAT ATTTTTAAGT CTAACTGGAG AGTGCAGCCT CTTTAGATAA AGAAGAAGCT
  TTGAGGCCAG CAGAAGGGTC TGGGACGTTT CTTGGACATG CAGGCTGCCT TTGTGCTGTT
  CTCGCCGAGC TGGGGTAATA TTTCCCACCT GAGGATTTGC ACAGTGACCT GGCTAGCAGC
  M
  TGTGTTACAC ACATCTCTCT GCCTCAAGGG AAGCCAGCCT GTGCCTTCCC TCTAGAATGC
  TGGTTATAGA GAAAGGACAA GATGTTGCAG CCATGAAGCA GTCTGCGAAA CTGTCACCAA
  GAGGCTTGAC CGGGTTGCTA AGAAGAGTTC TTGGGCTCTA GGGTGCCACC ATGTACCTCC
  TGGCGAGGTG ACATAGTGAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320539041	CHEV_2_145783795	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224711348					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:145799979 () rs orientation: forward

Symbol	Name	Function Class
Cfap61	cilia and flagella associated protein 61	Intron
Rr397368	regulatory region 397368	291 bp downstream
Rr566613	regulatory region 566613	1020 bp distal
Rr566614	regulatory region 566614	142 bp distal
Rr566615	regulatory region 566615	415 bp distal
Rr566616	regulatory region 566616	within coordinates