rs224696871 SNP Detail

Summary

• ID
  rs224696871
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141866046 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGAGCATG CTGTGTCTTT
  GTCTAGGCTG CCTGCTGGCA GAGCTGGAAG AGGCATTCAA ATGCATTCTC CCACGAGTCT
  AGTTTCTGAC CATAAAAAAA TGAAAACTGA GGCCACTGGC TACAACCAGG ATGTGAGGTT
  TCCTAGATTG GCTCTTCCCA GGACTTATGG GAAAACCAAA ATTTTGCACC CCCCGGGGGG
  K
  GGGGGGTGCG TCTTGTGAAA CTGAAAAAAA AAAAAAAAAA AGCCTAGTCT GTTCTGCCCT
  GGACTCTGAT GTCATTTTAA GTCACTGGCT GCCTGAGGAC TAGGGACACA GGGGTCTGCT
  GAGACCTGAG GAAAATCACA GCCACGGACA GCTCTGACCT CTGGCTAGAG TGTGAGGGGA
  AGGAAGGGAG GCCGTGAAAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	KK/HlJ	MA/MyJ	MOLF/EiJ	NZO/HlLtJ	PL/J	RF/J	RIIIS/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
ss363539412	MGP_WTSI_4_141694650	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	G	T	T	T	T	T	G	T	T	G	T	T	T	T	T	G	G	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	KK/HlJ	MA/MyJ	MOLF/EiJ	NZO/HlLtJ	PL/J	RF/J	RIIIS/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
rs224696871					SNP	T	T	G	T	T	T	T	T	G	T	T	G	T	T	T	T	T	G	G	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363539412	MGP_WTSI_4_141694650	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141866046 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kazn	kazrin, periplakin interacting protein			Intron
				Noncoding-Transcript-Variant
Rr377314	regulatory region 377314			within coordinates
Rr604003	regulatory region 604003			1317 bp distal
Rr604004	regulatory region 604004			within coordinates