rs224651809 SNP Detail

Summary

• ID
  rs224651809
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:134343552 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCCT TTTCTCTGCT CTCCCAGCTT
  C
  TCTCTCACCC TCCTCCTCCT CCTTT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321695458	CHEV_5_134790568	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224651809					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134343552 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16718	CpG island 16718	within coordinates
Gm71534	predicted gene, 71534	104 bp upstream
Gm71761	predicted gene, 71761	923 bp upstream
Gtf2i	general transcription factor II I	mRNA-UTR
Rr378666	regulatory region 378666	71 bp upstream
Rr399401	regulatory region 399401	931 bp downstream
Rr621988	regulatory region 621988	934 bp distal
Rr621989	regulatory region 621989	433 bp distal
Rr621990	regulatory region 621990	within coordinates
Rr621991	regulatory region 621991	115 bp proximal
Rr621992	regulatory region 621992	1025 bp proximal
Tssr1657	transcription start site region 1657	258 bp downstream
Tssr49086	transcription start site region 49086	1034 bp downstream
Tssr49087	transcription start site region 49087	1002 bp downstream
Tssr49088	transcription start site region 49088	707 bp downstream
Tssr49089	transcription start site region 49089	248 bp upstream
Tssr53629	transcription start site region 53629	1479 bp upstream
Tssr53630	transcription start site region 53630	878 bp upstream
Tssr53631	transcription start site region 53631	274 bp upstream
Tssr53632	transcription start site region 53632	246 bp upstream
Tssr53633	transcription start site region 53633	225 bp upstream
Tssr53634	transcription start site region 53634	199 bp upstream
Tssr53635	transcription start site region 53635	150 bp upstream
Tssr53636	transcription start site region 53636	127 bp upstream
Tssr53637	transcription start site region 53637	22 bp upstream
Tssr53638	transcription start site region 53638	within coordinates