rs224629690 SNP Detail

Summary

• ID
  rs224629690
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:104546396 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGCCCCGG TGGGGTCGCG
  GAGCCCCGCG GGCACGCGGG GACTTTCCTC CCTGGGGCAA GGGTCGGGGC GAGCGACGCG
  GCATCCTGGG CGCGCGGAGC CGCGTGGCCC GGAACGTGGC GTGGGTGAAG GGGACCTTGA
  GGCGCTGGGC ACAGCGTCTC TCCCGGCCGA GCTGCGGGCC CGTGGTCAGG TGGCGGCCGC
  Y
  GGGCTGCGGG AGTCGGGTCA TGGTGCCCGG TGACCTTGGG GGAGACGCTT CCAGCGCTGC
  CTACTCTAGG CGCCTGGAGA GATGCTTAGG TCGGGAAGAG GGACGACCTG AGGCCGCTTC
  ACGTGGTGCA CTCCTGCCGC CTTCTGCTGG GGCGGGAGTT ACTTAGGACT CGTGGCATAC
  CCGCCCAGCC TCCCCGGTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359092824	MGP_WTSI_3_104443003	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224629690					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359092824	MGP_WTSI_3_104443003	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104546396 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13645	CpG island 13645	within coordinates
Gm65697	predicted gene, 65697	598 bp upstream
Rr367518	regulatory region 367518	607 bp downstream
Rr582556	regulatory region 582556	609 bp distal
Rr582557	regulatory region 582557	402 bp distal
Rr582558	regulatory region 582558	492 bp distal
Rr582559	regulatory region 582559	within coordinates
Rr582560	regulatory region 582560	134 bp proximal
Rr582561	regulatory region 582561	1826 bp proximal
Slc16a1	solute carrier family 16 (monocarboxylic acid transporters), member 1	Intron
Tssr31045	transcription start site region 31045	405 bp downstream
Tssr34883	transcription start site region 34883	1519 bp upstream
Tssr34884	transcription start site region 34884	638 bp upstream
Tssr34885	transcription start site region 34885	538 bp upstream