rs224627885 SNP Detail

Summary

• ID
  rs224627885
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:84566469 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAATGCGCG CGCGCGCGCA
  CACACACACA CACACACACA CATACACAGG AGCGCACACG GTGCGCACCC TCTTGATGCT
  AGTTTGACTA TAAAGCTACT TTACTCCTGC TTTTTCTCCC TCCTGGATCC CCTCCCTGGT
  TCCCAGCTTT TGGCTGTTCT GCGTGGAAGT TCCTTATCCG ACTGTCCCCC TCGATTGGGA
  R
  TTGCCAGAAG TCTCTCTACC CAGACTCCAT CTCGCGGAAT TCCGTGGGAC CCGGCAAACT
  CAAAAGATAC ATGTTATTCC CTCCTGATTG CCTATAGCCA GGGTCCGCAT TCCTAATATC
  TGCATCTACA AACCTCAGTA GTCTAGATCC ACATGTTTCT TACCATCCAA TGCCTGGAGG
  GTCTTCTGTG CCTGTGTGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369055498	MGP_WTSI_6_84539481	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224627885					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369055498	MGP_WTSI_6_84539481	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:84566469 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cyp26b1	cytochrome P450, family 26, subfamily b, polypeptide 1			Intron
				mRNA-UTR
Rr633074	regulatory region 633074			992 bp distal
Rr633075	regulatory region 633075			359 bp distal
Rr633076	regulatory region 633076			642 bp proximal
Rr633077	regulatory region 633077			750 bp proximal
Rr633078	regulatory region 633078			1496 bp proximal
Tssr61721	transcription start site region 61721			1833 bp upstream
Tssr61722	transcription start site region 61722			1501 bp upstream
Tssr61723	transcription start site region 61723			1477 bp upstream
Tssr61724	transcription start site region 61724			1168 bp upstream
Tssr61725	transcription start site region 61725			878 bp upstream
Tssr61726	transcription start site region 61726			842 bp upstream
Tssr61727	transcription start site region 61727			800 bp upstream
Tssr61728	transcription start site region 61728			781 bp upstream
Tssr61729	transcription start site region 61729			504 bp upstream