rs224496021 SNP Detail

Summary

• ID
  rs224496021
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:69767610 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCACCACTC CCCTCCCCCT
  TCACTCTAAG GTCCCAACTT CCTATGCGCT GATACTCAGT TCTGGGAGAT TGGGTTGTTC
  TCGGAGGAAT GCAGCCTAGT GACTTCTACA TTTTAAAAAT TCGGTTTGTT TGTTTTGTTT
  TTTCTGTAGC CTGTTCGCAC TTCTTCAGAG ATTAGCCTCT CAAGAGAGGG CGCCTTCTGC
  S
  TTACTGGGGG GAGCAGGGGT TCTGAGAGCT ACGGAGGAGA TCGAGGTGGC GCTGTCACCT
  CACCTCCGAT TGCTGCAGTA AAACCGGGAG CCTAGGCAGA GATAGGAGGG GGGATGGGTG
  TTGCCCTCCC CCTCGCTTCA GCGGGGAGTT TCGACTCTAC CAGAGGGGCA CGTATTTTGG
  TGGTGGTGCA AATGATGATA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358334237	MGP_WTSI_3_69664199	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224496021					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358334237	MGP_WTSI_3_69664199	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:69767610 () rs orientation: forward

Symbol	Name	Function Class
Rr578229	regulatory region 578229	366 bp distal
Rr578230	regulatory region 578230	within coordinates
Rr578231	regulatory region 578231	within coordinates
Rr578232	regulatory region 578232	35 bp proximal
Rr578233	regulatory region 578233	1036 bp proximal
Rr578234	regulatory region 578234	1154 bp proximal
Sptssb	serine palmitoyltransferase, small subunit B	Intron
Tssr903	transcription start site region 903	413 bp upstream
Tssr33557	transcription start site region 33557	1403 bp upstream
Tssr33558	transcription start site region 33558	376 bp upstream
Tssr33559	transcription start site region 33559	1097 bp downstream