rs224429814 SNP Detail

Summary

• ID
  rs224429814
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:95787019 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GAATAATTG GGCTTGATTC ACATGATGAG
  CTGACATAAG CTTTGCAGTT CCAGGACGGA TCCTTCTCTT GATCTTGTTC TCACTGTTGT
  CCACTGAACA GCGGGAGAAG CTGAAGCTCT CATTCCTGGT CATCCCCCTT gccccccccg
  Y
  cccccccccc cgTGTTCCTG CAAGGAGAAG GCAGCTCTGT GCAAATAGTC TCTAGATTCT
  CAGGGCCCAG GAGCAGCCCC TTGGGGGTAG AGGAATTCCA TTACTCCACC TGGTGTCGCT
  TGCTCTCCTC TGGAGCCGGA AAGGGCCTCA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321216057	CHEV_4_95565473	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224429814					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:95787019 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fggy	FGGY carbohydrate kinase domain containing			Intron
				Noncoding-Transcript-Variant
Rr376869	regulatory region 376869			443 bp upstream
Rr595486	regulatory region 595486			1743 bp distal
Rr595487	regulatory region 595487			1453 bp distal
Rr595488	regulatory region 595488			804 bp distal
Rr595489	regulatory region 595489			1297 bp distal
Rr595490	regulatory region 595490			1628 bp proximal