rs224390033 SNP Detail

Summary

• ID
  rs224390033
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135438143 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGACAAGA CACAGCTTAT
  CAACCGAGAA TCACCCTAGA GCAGTGGCTC TCAACCCTCT TAACGCTGCA ACCCTTTAAT
  ATACTTCCTC ATGTTGTGGT GATTCCCAAC CATAAAATAC TTCATTGCTA CTTCATAGCT
  GTAATCTTGC TACTCTTATG AATCATAATG TAAATATCTG TGATCCCCCC ATCACCCCCG
  R
  CCCCCCACCC CCGTTTCTCT TCTCCCTTTT GCTCTGCACT CCCCCACCCC CCACCCCGCT
  CACTCCAGGC CCAGCTCAAT CCAGTCCATA GGTTTTTAAA ATTTGTTTCT CATTACGGAT
  GGTTGTGAGC CACCTTGTGC TTGCTGGGAT TTGAACTCAT GACTTCCAGG AGAATCATCA
  GTGCTCTTAA CTGCCTAGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	WSB/EiJ
ss363373307	MGP_WTSI_4_135266747	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	A	G	G	A	A	G	G	G	A	G	G	G	G	G	G	A	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	WSB/EiJ
rs224390033					SNP	G	G	G	G	G	G	G	G	G	G	A	G	A	G	G	A	A	G	G	G	A	G	G	G	G	G	G	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363373307	MGP_WTSI_4_135266747	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135438143 () rs orientation: forward

Symbol	Name	Function Class
Rr602110	regulatory region 602110	952 bp distal
Rr602111	regulatory region 602111	1785 bp distal
Rr602112	regulatory region 602112	1573 bp distal
Rr602113	regulatory region 602113	1341 bp distal
Rr602114	regulatory region 602114	1066 bp distal
Rr602115	regulatory region 602115	114 bp distal