rs224385954 SNP Detail

Summary

• ID
  rs224385954
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:21568511 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTTTTT TTTTTTTTTA
  AGAGGCAGGG TTTACCTTGA AATATCAGTG GCGAGGGGGC ATGCGAGGAG CGTTCGGTCA
  GGAAGCTGAT GGTTTTATTT GTGGTTTTTC AGCAGAGTCA CGTGAAATGG CAATAGTTTC
  CTCCTCTCCT GCCCTAGGCT GGCTTGCTTC TCTGCTCTGG ACTGGGGAGG TTCTCCTGGG
  C
  GGGGGTGGGG GGGGGTGGGA GGTAGGGGGT GGGGGTGGGG TGGATTGTAT TGACCCTGGG
  CCAGTGGGAA ATGGGCTCAC AGACACTCAT GGGACCATGT TGGGTTCTGA TTTCTTCCCT
  CTCTACTCAT ATCTTTGGGT GTGCAGCTGG AAGCTATGTA AAATTTATGA GCGTGAGGGT
  TTTGTTTGTT TGGTTTTGTG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/10SnJ	CE/J	MA/MyJ	PL/J	QSi3/Ianm	SJL/J	SPRET/EiJ
ss399937164	MGP_WTSI_18_21593955	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/10SnJ	CE/J	MA/MyJ	PL/J	QSi3/Ianm	SJL/J	SPRET/EiJ
rs224385954					SNP	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss399937164	MGP_WTSI_18_21593955	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:21568511 () rs orientation: forward

Symbol	Name	Function Class
D18Mit68	DNA segment, Chr 18, Massachusetts Institute of Technology 68	171 bp proximal
Rr393394	regulatory region 393394	183 bp downstream
Rr534684	regulatory region 534684	1644 bp proximal