rs224275511 SNP Detail

Summary

• ID
  rs224275511
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:101870371 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGGTCCCC AACCCCACGT
  TGAGCACCAT TGCCTTGACA GCTACTCCCA GACTCCGGAT GGATTTGGCA AAAGGTTCAA
  CCCAACCCTT GCTTTCAACA TCATCTTATA AGCCTGTACT TTCCTGTGTG CCCTTCCCAC
  CCAAACCAGG CTGCAAGATA CTGGGATGCA TGGCAGGTAC TTTGTCCAGC AGTAGCTGGG
  R
  GCTTAGCTGA GTCACAGAGT AAGGCTCTGT CATCTGCTTA ATGGCTTTAC ACAAGTCCCA
  TCATGTCCCT ACAGCTCATT TTCCCCCTCT ATAAATAGAG GGGTCTTAGT GATAAGAATG
  GCTTCCTTAG AAGCTTACAG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  TGATGCTAAT GGCAGGGCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320433846	CHEV_2_101880183	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224275511					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101870371 () rs orientation: forward

Symbol	Name	Function Class
Ldlrad3	low density lipoprotein receptor class A domain containing 3	Intron
Rr367252	regulatory region 367252	345 bp downstream
Rr561617	regulatory region 561617	1068 bp distal
Rr561618	regulatory region 561618	387 bp distal
Rr561619	regulatory region 561619	within coordinates
Tssr19089	transcription start site region 19089	429 bp downstream
Tssr19090	transcription start site region 19090	390 bp downstream
Tssr19091	transcription start site region 19091	367 bp downstream