rs224259859 SNP Detail

Summary

• ID
  rs224259859
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134700766 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGGTGGGG AGAGAACAGG
  TGGAAAGAGA ACAGCTGGGA AGAGAACAGG TGGAAAGAGA ACAGGTGGGG AGAGAACAGG
  TGGGAAGAGA ACATCTGGGA AGAGAACAGG TGGAGAGAGA ACAGGTGAGA AGAGAACAGC
  TGGGAAGAGA ACAGGTGGGA AGAGAACAGG TGGGAAGAGA ACAGGTGGAG AGAGAACAGG
  Y
  TGGGGCCTTT AAGAGATGGT TAGGGCCCAG GGGCTGAGGC CCCCCTTAAT GGACCCAAAT
  TGTTATTCTT GGAGAGGATT TTGTGGGGGG AGGGAAAGGA TGAACTTAGC CTGGGTGAAG
  TGGAAACTTA AGAATTCTTT GGAAAGTCAG TTATGTTGGA TGGTGTTTTC CTGGGGCAAA
  CACATGAAAG AAGTTTTATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	DBA/1J	DBA/2J	FVB/NJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363353258	MGP_WTSI_4_134529370	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	DBA/1J	DBA/2J	FVB/NJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224259859					SNP	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363353258	MGP_WTSI_4_134529370	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134700766 () rs orientation: forward

Symbol	Name	Function Class
Gm68620	predicted gene, 68620	within coordinates
Rr601887	regulatory region 601887	1713 bp proximal
Rr601888	regulatory region 601888	1893 bp proximal