rs224252580 SNP Detail

Summary

• ID
  rs224252580
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151895732 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAACAAAGA GGTGCAGCGG ACTAACTGCA
  TGGAAGAGAA TACTGAACTA GAAGAAGGCT ATTACACTGA ATAGTTAAGT TGAAACACAT
  CAACAACTGT CCACATCCAG AGTAAATTAG TGAGTAAGAA ATAATCAACA AAGTAAAGAA
  R
  GAAGAAATGA AGGCTAGAAA ACCAGAACCC TCTAAAGGTG TCCTTTGAGG AAAAGTTGTA
  ACTTTTATAT TTTAAAACTG CATTTCATTA TGGTCAGTTG GTCTGTTGAT GGCAcgtgtg
  tgtcatggta tgcatgtaga ggtcagagga                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321028360	CHEV_3_151853059	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224252580					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151895732 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dnajb4	DnaJ heat shock protein family (Hsp40) member B4			Intron
				Noncoding-Transcript-Variant
Rr587480	regulatory region 587480			387 bp distal
Rr587481	regulatory region 587481			1015 bp proximal
Rr587482	regulatory region 587482			1731 bp proximal
Rr587483	regulatory region 587483			1744 bp proximal