rs224248640 SNP Detail

Summary

• ID
  rs224248640
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:114816139 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGTGGAAA GTTTCTGGAG
  CTTGACCCTG ACTCCAGTTT GCCTCTGATG CTATTCTTAG AGTGGCCTTG AGCCATGGCA
  GCTGAGGGAC AGGACGGGTC CCAGCTGCCT GACATACTGG CTCACCACCC TGTCAGCAGT
  GCTTGTCATT GGCATCCAGA TGCTCCCTTA CCCACTGTCG CTTTCTCCTT CCCCTCCCCA
  Y
  GTGCAGATAA CAAGGCATCT TATGGCACTG TCCTGGAGGG GTGCTAGCCC TGCTAGCCAG
  GCCCCCCAGT AAGACACAGA AGCCAGCAAG GCACCTGAGA CCTCTGCCCT TGCAGTCCTG
  AAACTTCCAT GAGCTCTTGC AACTGGGAGG CTGAGGCTTA AAGAAACTTA ATAAACTTCC
  CTAGAGTCAC ATCACAAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321914853	CHEV_6_114789196	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224248640					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:114816139 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atg7	autophagy related 7			Intron
				Noncoding-Transcript-Variant
Gm67840	predicted gene, 67840			within coordinates
Rr636840	regulatory region 636840			within coordinates
Rr636841	regulatory region 636841			1101 bp proximal