rs224219333 SNP Detail

Summary

• ID
  rs224219333
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:151764917 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTTGAGGGA CACACGGAAT AAGGACAGCA
  TGTCATCGGC AACACTAGCC ACAGACTGAA CATAAATAAC AACGATTAGA GCTGCTTTTC
  CTCTTCCCAC TCAAGATAAA CTCAGATCTC AGCTACGATG GAAACCTCAG CATCACTAAC
  R
  GCCCCAGGCT TTGTCATAGG GGCAGGTATT CTCCCACAGA CTTGTGAGGG TTGTTTCATC
  CCCCCCCCCC CCGAGATATA ATAGAAAAGG TGACTGTGGA CAGATATCAA GGTGCCTTCC
  CCATAGATAT TAGAATCATC CACTTATCTG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320060299	CHEV_1_153736296	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224219333					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:151764917 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1700025G04Rik	RIKEN cDNA 1700025G04 gene			Intron
				mRNA-UTR
Rr420378	regulatory region 420378			1107 bp distal
Rr420379	regulatory region 420379			863 bp proximal
Rr420380	regulatory region 420380			1997 bp proximal