rs224218427 SNP Detail

Summary

• ID
  rs224218427
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:117150315 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTTTTCCTT TAGCTTTCCT CACTTGCCAA
  GCTCCAACTT GGCCAGAAGC TCAAATGCCT CCACTGTGGT CTCTTCTCTG TGTCCCCTGG
  GAGACATCCT TAGCACGTCC CTAACTCTGC GGTGGTGGTC CCAACACGAT TCAAGTGCTA
  C
  GTCTTCCAAA ACTGAAGCTT CCGGGAGCAG CAGCTGGGCC CTGCAGTGAG GACCTTTAGC
  TGGGTGTGTT GGGTGAGCCC ACAGGATCGC TTTCTCCCGC TTGGCTGTAC AGCGTCTCTC
  CCCTTGTGTT TTGGCAGTGC ACGGCTGAAG                                 
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321921053	CHEV_6_117123372	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224218427					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117150315 () rs orientation: forward

Symbol	Name	Function Class
Cxcl12	C-X-C motif chemokine ligand 12	Intron
Rr637288	regulatory region 637288	686 bp distal
Rr637289	regulatory region 637289	512 bp proximal
Rr637290	regulatory region 637290	697 bp proximal
Rr637291	regulatory region 637291	748 bp proximal
Tssr58392	transcription start site region 58392	1867 bp downstream
Tssr58393	transcription start site region 58393	1848 bp downstream
Tssr58394	transcription start site region 58394	1808 bp downstream
Tssr58395	transcription start site region 58395	138 bp upstream
Tssr58396	transcription start site region 58396	154 bp upstream
Tssr58397	transcription start site region 58397	192 bp upstream
Tssr58398	transcription start site region 58398	218 bp upstream
Tssr58399	transcription start site region 58399	240 bp upstream
Tssr58400	transcription start site region 58400	268 bp upstream
Tssr58401	transcription start site region 58401	304 bp upstream
Tssr58402	transcription start site region 58402	335 bp upstream
Tssr58403	transcription start site region 58403	353 bp upstream
Tssr58404	transcription start site region 58404	372 bp upstream
Tssr58405	transcription start site region 58405	414 bp upstream
Tssr58406	transcription start site region 58406	444 bp upstream
Tssr58407	transcription start site region 58407	475 bp upstream
Tssr58408	transcription start site region 58408	542 bp upstream
Tssr58409	transcription start site region 58409	564 bp upstream
Tssr58410	transcription start site region 58410	586 bp upstream
Tssr58411	transcription start site region 58411	602 bp upstream
Tssr58412	transcription start site region 58412	629 bp upstream
Tssr58413	transcription start site region 58413	642 bp upstream
Tssr58414	transcription start site region 58414	675 bp upstream
Tssr58415	transcription start site region 58415	690 bp upstream
Tssr58416	transcription start site region 58416	705 bp upstream
Tssr58417	transcription start site region 58417	759 bp upstream
Tssr58418	transcription start site region 58418	792 bp upstream
Tssr58419	transcription start site region 58419	811 bp upstream
Tssr58420	transcription start site region 58420	838 bp upstream
Tssr58421	transcription start site region 58421	857 bp upstream
Tssr58422	transcription start site region 58422	883 bp upstream
Tssr58423	transcription start site region 58423	891 bp upstream
Tssr58424	transcription start site region 58424	953 bp upstream
Tssr58425	transcription start site region 58425	998 bp upstream
Tssr58426	transcription start site region 58426	1020 bp upstream
Tssr58427	transcription start site region 58427	1047 bp upstream
Tssr58428	transcription start site region 58428	1062 bp upstream
Tssr58429	transcription start site region 58429	1127 bp upstream
Tssr58430	transcription start site region 58430	1172 bp upstream
Tssr58431	transcription start site region 58431	1268 bp upstream
Tssr58432	transcription start site region 58432	1341 bp upstream
Tssr58433	transcription start site region 58433	1377 bp upstream
Tssr58434	transcription start site region 58434	1815 bp upstream
Tssr62617	transcription start site region 62617	202 bp downstream
Tssr62618	transcription start site region 62618	224 bp downstream
Tssr62619	transcription start site region 62619	260 bp downstream
Tssr62620	transcription start site region 62620	303 bp downstream
Tssr62621	transcription start site region 62621	369 bp downstream
Tssr62622	transcription start site region 62622	921 bp downstream
Tssr62623	transcription start site region 62623	939 bp downstream
Tssr62624	transcription start site region 62624	1054 bp downstream
Tssr62625	transcription start site region 62625	1205 bp downstream
Tssr62626	transcription start site region 62626	1301 bp downstream
Tssr62627	transcription start site region 62627	1332 bp downstream
Tssr62628	transcription start site region 62628	1467 bp downstream
Tssr62629	transcription start site region 62629	1647 bp downstream