rs224211122 SNP Detail

Summary

• ID
  rs224211122
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:141169366 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGACAAGT AACATAAACG
  TTAGAAATTG CCATTTCACA GAAGTCACAC TTGGATGTGT GTAAGAGTTA ATGACTACAA
  TTTTGAGAAC ATAGATATAA ACAAATTCTT GAACTTAACT GAGGAAGGTA CTGTTGAACT
  GAGGTAGCAA AAAAGGCTGA GTGTCTTCTA GATCAGAACA ACAGTCATCA ATGACAATGC
  Y
  GGGCATTTTA CCTATAGTTA ATACTTTCTA ACCTCAGGAA ACCTTATATC TCATTGCTTC
  TAATAAACCC ACTTTACAGA TCAGGAAGTG GAGACACCTG GCCTTTTGAG CCATGCCATC
  CAGCTAGTAA ATCACTGTGG ATTGATCCGC CCATCTGGCA TCAGCACCTG ACTACCCACA
  TTTCCTGATG TGCCCATGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359993203	MGP_WTSI_3_141126569	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224211122					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359993203	MGP_WTSI_3_141126569	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141169366 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13884	CpG island 13884	1035 bp proximal
Gm15688	predicted gene 15688	within coordinates
Gm66152	predicted gene, 66152	within coordinates
Rr586318	regulatory region 586318	758 bp distal
Rr586319	regulatory region 586319	1121 bp proximal
Rr586320	regulatory region 586320	1377 bp proximal
Rr586321	regulatory region 586321	1718 bp proximal
Tssr1065	transcription start site region 1065	1090 bp upstream
Tssr1066	transcription start site region 1066	1656 bp upstream
Tssr32031	transcription start site region 32031	1511 bp upstream
Tssr32032	transcription start site region 32032	1574 bp upstream
Tssr32033	transcription start site region 32033	1766 bp upstream
Tssr32034	transcription start site region 32034	1881 bp upstream
Tssr32035	transcription start site region 32035	1937 bp upstream
Tssr32036	transcription start site region 32036	1962 bp upstream
Tssr32037	transcription start site region 32037	1987 bp upstream
Tssr35916	transcription start site region 35916	970 bp downstream
Unc5c	unc-5 netrin receptor C	1994 bp upstream