rs224208449 SNP Detail

Summary

• ID
  rs224208449
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:118455545 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTAAAAAG GTATATCGTG
  TATATAGATT AAAAACAAAA ACAAACAAAC AAAAAACCAA ATGCTTAATT CCAGTCAGCC
  GGGTGCATAC CAAAGGCCTA ATGTATAAGG CCAGATACAA ATGCGCCAAT CATCAGCCTT
  AGGAAATCTC CTTCGTAACA GAGAACACAA ATGAACAACA GTTCTCATCT TTTAGATCTG
  Y
  CTCTGCTGGA CGGGGTGGCA CACACCTGTA AACCCAGCAT CCTGGAGGCT GAGGCAGGAG
  TTTCAACAGC TCCAAACTAG TCTGGAGCTC CAAGGCCAGA TCGACACCCC ACCCCCAATC
  TGTTTTACTT CTATTCCCTT AGAGGGTGAG TGTATATAAT TCCCAGATTC TCAGGAAAAT
  TTAATACTGA AAGACCTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321924614	CHEV_6_118428602	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224208449					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:118455545 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17903	CpG island 17903	380 bp proximal
Rr637483	regulatory region 637483	263 bp distal
Rr637484	regulatory region 637484	within coordinates
Rr637485	regulatory region 637485	726 bp proximal
Rr637486	regulatory region 637486	1925 bp proximal
Tssr62662	transcription start site region 62662	653 bp downstream
Zfp9	zinc finger protein 9	Intron