rs224190641 SNP Detail

Summary

• ID
  rs224190641
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:50397080 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGCA CGGAAGGAAG GCTTGGTTTT
  Y
  TGGGTCATCA AAGTTAGGTT TTTTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320757853	CHEV_3_50246553	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224190641					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50397080 () rs orientation: forward

Symbol	Name	Function Class
Rr367428	regulatory region 367428	5 bp downstream
Rr576159	regulatory region 576159	970 bp proximal
Slc7a11	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	Intron
Tssr873	transcription start site region 873	881 bp upstream
Tssr29027	transcription start site region 29027	1116 bp upstream
Tssr33166	transcription start site region 33166	341 bp upstream
Tssr33167	transcription start site region 33167	81 bp downstream
Tssr33168	transcription start site region 33168	785 bp downstream
Tssr33169	transcription start site region 33169	825 bp downstream
Tssr33170	transcription start site region 33170	852 bp downstream
Tssr33171	transcription start site region 33171	881 bp downstream
Tssr33172	transcription start site region 33172	908 bp downstream
Tssr33173	transcription start site region 33173	947 bp downstream
Tssr33174	transcription start site region 33174	972 bp downstream
Tssr33175	transcription start site region 33175	1147 bp downstream