rs224188963 SNP Detail

Summary

• ID
  rs224188963
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:9095532 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAATCTTTC TCTGATGTGT
  CACTTTGTCT GCCTCCCAAT TAGACATCAC TTTCATATGT AGGTGCTTCC GTCTACAAAT
  TAACTTTACC TTCATTATTT TGGATTAAAG GTGTGTATTA AGTGTGTGTC TTTATTTAAG
  CCAGAGGGAT TAAATTCTGT GCTGAGGGCA TGTCTGTATT ACAGCCAGAG TGGTGGCCAT
  R
  TTGCAGGAAT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCCAC
  CTCCACCTCT CCCTATCCTC CTCATCTATC TATCTATATA TTTGGGCATA TATATATATA
  AGTTTACTAC TGAGGCATCA TTAATATTGT GGCCCTAGTC ACAAATTGCT GTTGGAGAGC
  AAGATCTGTT ATTTTTTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321738841	CHEV_6_9045532	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224188963					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:9095532 () rs orientation: forward

Symbol	Name	Function Class
Nxph1	neurexophilin 1	Intron
Rr626465	regulatory region 626465	1831 bp proximal
Tssr54933	transcription start site region 54933	857 bp upstream