rs224172012 SNP Detail

Summary

• ID
  rs224172012
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116529707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGGGAAACA GATCAGGACT TTTCAGATGC TAGGTAAGCA
  CTCTAACACA GAGATTCATC CACCCACCTC CATCCATCCA TCCATCCATC CATCCATCCA
  Y
  CCATCCATCC ATCCACCCAT CCATCCATCC ATCCATCCAC CCATCCATCC ATCCATCCAT
  CCATCCATCT ACCCATCCAT CCATCCATCC ATCCATCCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320896018	CHEV_3_116438976	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224172012					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116529707 () rs orientation: forward

Symbol	Name	Function Class
Gm54181	predicted gene, 54181	Intron
Gm64822	predicted gene, 64822	within coordinates
Rr375627	regulatory region 375627	1521 bp downstream
Rr583772	regulatory region 583772	1325 bp proximal
Rr583773	regulatory region 583773	1402 bp proximal
Rr583774	regulatory region 583774	1427 bp proximal