rs224164597 SNP Detail

Summary

• ID
  rs224164597
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163379231 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TAGTCTCAG TCCCCAACTC AGCCCAGAAG
  GACAAGTCTG GAGGACATTT GATCAatata tatatatata tatatatata tacatatata
  tatatatata catacataca tatatagttc agatccccaa tgactctttg ggggtactgc
  R
  aggcttatca gccatctcat tttcactttg cggttgggga aactgagtca gagagaggca
  agtgaGCCAT TTAAGTGAGC CATTTAAAGT CAGTAAACTG AAGCAGGTGA AGAATTCAGA
  GGGGACCTCA CAGTGATCTA AACAGAGCAC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320603578	CHEV_2_163363047	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224164597					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163379231 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12637	CpG island 12637	1946 bp distal
Hnf4a	hepatic nuclear factor 4, alpha	Intron
Hnf4aos	hepatic nuclear factor 4 alpha, opposite strand	within coordinates
Rr569400	regulatory region 569400	1626 bp distal
Rr569403	regulatory region 569403	1292 bp distal
Rr569404	regulatory region 569404	1936 bp proximal