rs224141779 SNP Detail

Summary

• ID
  rs224141779
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:113069258 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    caagagcag tatgcactct attaactgct
  gagccatctc ttcagacccA GATTCTAGtt tgtttttttc caagacagga tttctctgtg
  tatccttggc tgtcctgaaa ctcagagatc cacctgcctc tgcctcccaa gagctgagat
  Y
  aaaggcgtgc gccaccactg cccagcCTGA TTCAAGTGTC TTGGCAAATT TAATTTGCCC
  TAatagaaat agtgccttcc tcatagagtt gttattataa atgttacatg gaaatggaat
  atagaaaaac tttctggtac agaataatca                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321909801	CHEV_6_113042291	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224141779					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113069258 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr636457	regulatory region 636457			726 bp proximal
Rr636458	regulatory region 636458			764 bp proximal
Setd5	SET domain containing 5			Intron
				Noncoding-Transcript-Variant